You could also try running the test pattern through LaserBoy. You will have to turn off the optomization feature. You can change the blanking timing in LaserBoy to match the speed of your scanners. James put it to me like this, and this is your problem, blanking using modulation or a PCAOM is instantanious compared to a moving galvo. The signal to the glavo is instant, but the galvo has to accelerate, slow down, stop and accelerate again. The inertia involved makes the glavos slow compared to TTL or analog modulation or a PCAOM. So you have to dumb down the blanking to the scanners' speed.
If you're the smartest person in the room, then you're in the wrong room.